An Introduction to the EcoTroph R Package: Analyzing Aquatic Ecosystem Trophic Networks

Abstract:

Recent advances in aquatic ecosystem modelling have particularly focused on trophic network analysis through trophodynamic models. We present here a R package devoted to a recently developed model, EcoTroph. This model enables the analysis of aquatic ecological networks and the related impacts of fisheries. It was available through a plug-in in the well-known Ecopath with Ecosim software or through implementations in Excel sheets. The R package we developed simplifies the access to the EcoTroph model and offers a new interfacing between two widely used software, Ecopath and R.

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Published

June 2, 2013

Received

May 18, 2012

DOI

10.32614/RJ-2013-010

Volume

Pages

5/1

98 - 107

CRAN packages used

EcoTroph, XML

CRAN Task Views implied by cited packages

WebTechnologies

Footnotes

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    Citation

    For attribution, please cite this work as

    Colléter, et al., "The R Journal: An Introduction to the EcoTroph R Package: Analyzing Aquatic Ecosystem Trophic Networks", The R Journal, 2013

    BibTeX citation

    @article{RJ-2013-010,
      author = {Colléter, Mathieu and Guitton, Jérôme and Gascuel, Didier},
      title = {The R Journal: An Introduction to the EcoTroph R Package: Analyzing Aquatic Ecosystem Trophic Networks},
      journal = {The R Journal},
      year = {2013},
      note = {https://doi.org/10.32614/RJ-2013-010},
      doi = {10.32614/RJ-2013-010},
      volume = {5},
      issue = {1},
      issn = {2073-4859},
      pages = {98-107}
    }