adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

Abstract:

The ade4 package provides tools for multivariate analyses. Whereas new statistical methods have been added regularly in the package since its first release in 2002, the graphical functions, that are used to display the main outputs of an analysis, have not benefited from such enhancements. In this context, the adegraphics package, available on CRAN since 2015, is a complete reimplementation of the ade4 graphical functionalities but with large improvements. The package uses the S4 object system (each graph is an object) and is based on the graphical framework provided by lattice and grid. We give a brief description of the package and illustrate some important functionalities to build elegant graphs.

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Published

Oct. 6, 2017

Received

Feb 17, 2017

DOI

10.32614/RJ-2017-042

Volume

Pages

9/2

198 - 212

Supplementary materials

Supplementary materials are available in addition to this article. It can be downloaded at RJ-2017-042.zip

CRAN packages used

vegan, MASS, FactoMineR, ade4, lattice, adegraphics, sp, spdep, RColorBrewer, ggplot2

CRAN Task Views implied by cited packages

Multivariate, Spatial, Graphics, Psychometrics, Environmetrics, Econometrics, Phylogenetics, Distributions, NumericalMathematics, Robust, SocialSciences, SpatioTemporal

Footnotes

    Reuse

    Text and figures are licensed under Creative Commons Attribution CC BY 4.0. The figures that have been reused from other sources don't fall under this license and can be recognized by a note in their caption: "Figure from ...".

    Citation

    For attribution, please cite this work as

    Siberchicot, et al., "The R Journal: adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data", The R Journal, 2017

    BibTeX citation

    @article{RJ-2017-042,
      author = {Siberchicot, Aurélie and Julien-Laferrière, Alice and Dufour, Anne-Béatrice and Thioulouse, Jean and Dray, Stéphane},
      title = {The R Journal: adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data},
      journal = {The R Journal},
      year = {2017},
      note = {https://doi.org/10.32614/RJ-2017-042},
      doi = {10.32614/RJ-2017-042},
      volume = {9},
      issue = {2},
      issn = {2073-4859},
      pages = {198-212}
    }