tramME: Mixed-Effects Transformation Models Using Template Model Builder

Abstract:

Linear transformation models constitute a general family of parametric regression models for discrete and continuous responses. To accommodate correlated responses, the model is extended by incorporating mixed effects. This article presents the R package tramME, which builds on existing implementations of transformation models (mlt and tram packages) as well as Laplace approximation and automatic differentiation (using the TMB package), to calculate estimates and perform likelihood inference in mixed-effects transformation models. The resulting framework can be readily applied to a wide range of regression problems with grouped data structures.

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Authors

Affiliations

Bálint Tamási

 

Torsten Hothorn

 

Published

Aug. 16, 2021

Received

Nov 2, 2020

DOI

10.32614/RJ-2021-075

Volume

Pages

13/2

398 - 418

CRAN packages used

nlme, lme4, tramME, mlt, tram, TMB, glmmTMB, survival, boxcoxmix, ordinalCont, coxme, parfm, frailtypack, ordinal

CRAN Task Views implied by cited packages

Survival, Econometrics, Psychometrics, SocialSciences, Environmetrics, OfficialStatistics, SpatioTemporal, ChemPhys, ClinicalTrials, Finance, Spatial

Footnotes

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    Text and figures are licensed under Creative Commons Attribution CC BY 4.0. The figures that have been reused from other sources don't fall under this license and can be recognized by a note in their caption: "Figure from ...".

    Citation

    For attribution, please cite this work as

    Tamási & Hothorn, "The R Journal: tramME: Mixed-Effects Transformation Models Using Template Model Builder", The R Journal, 2021

    BibTeX citation

    @article{RJ-2021-075,
      author = {Tamási, Bálint and Hothorn, Torsten},
      title = {The R Journal: tramME: Mixed-Effects Transformation Models Using Template Model Builder},
      journal = {The R Journal},
      year = {2021},
      note = {https://doi.org/10.32614/RJ-2021-075},
      doi = {10.32614/RJ-2021-075},
      volume = {13},
      issue = {2},
      issn = {2073-4859},
      pages = {398-418}
    }