BayesSenMC: an R package for Bayesian Sensitivity Analysis of Misclassification

Abstract:

In case–control studies, the odds ratio is commonly used to summarize the association be tween a binary exposure and a dichotomous outcome. However, exposure misclassification frequently appears in case–control studies due to inaccurate data reporting, which can produce bias in measures of association. In this article, we implement a Bayesian sensitivity analysis of misclassification to provide a full posterior inference on the corrected odds ratio under both non-differential and differen tial misclassification. We present an R (R Core Team, 2018) package BayesSenMC, which provides user-friendly functions for its implementation. The usage is illustrated by a real data analysis on the association between bipolar disorder and rheumatoid arthritis.

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Authors

Affiliations

Jinhui Yang

 

Lifeng Lin

 

Haitao Chu

 

Published

Dec. 14, 2021

Received

Jun 5, 2020

DOI

10.32614/RJ-2021-097

Volume

Pages

13/2

228 - 238

CRAN packages used

BayesSenMC, episensr, lme4, rstan, ggplot2

CRAN Task Views implied by cited packages

Bayesian, Econometrics, Environmetrics, OfficialStatistics, Phylogenetics, Psychometrics, SocialSciences, SpatioTemporal, TeachingStatistics

Footnotes

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    Citation

    For attribution, please cite this work as

    Yang, et al., "The R Journal: BayesSenMC: an R package for Bayesian Sensitivity Analysis of Misclassification", The R Journal, 2021

    BibTeX citation

    @article{RJ-2021-097,
      author = {Yang, Jinhui and Lin, Lifeng and Chu, Haitao},
      title = {The R Journal: BayesSenMC: an R package for Bayesian Sensitivity Analysis of Misclassification},
      journal = {The R Journal},
      year = {2021},
      note = {https://doi.org/10.32614/RJ-2021-097},
      doi = {10.32614/RJ-2021-097},
      volume = {13},
      issue = {2},
      issn = {2073-4859},
      pages = {228-238}
    }